Package: IDSL.IPA 2.9

Dinesh Barupal

IDSL.IPA: Intrinsic Peak Analysis (IPA) for HRMS Data

A multi-layered untargeted pipeline for high-throughput LC/HRMS data processing to extract signals of organic small molecules. The package performs ion pairing, peak detection, peak table alignment, retention time correction, aligned peak table gap filling, peak annotation and visualization of extracted ion chromatograms (EICs) and total ion chromatograms (TICs). The 'IDSL.IPA' package was introduced in <doi:10.1021/acs.jproteome.2c00120> .

Authors:Sadjad Fakouri-Baygi [aut], Dinesh Barupal [cre, aut]

IDSL.IPA_2.9.tar.gz
IDSL.IPA_2.9.zip(r-4.5)IDSL.IPA_2.9.zip(r-4.4)IDSL.IPA_2.9.zip(r-4.3)
IDSL.IPA_2.9.tgz(r-4.4-any)IDSL.IPA_2.9.tgz(r-4.3-any)
IDSL.IPA_2.9.tar.gz(r-4.5-noble)IDSL.IPA_2.9.tar.gz(r-4.4-noble)
IDSL.IPA_2.9.tgz(r-4.4-emscripten)IDSL.IPA_2.9.tgz(r-4.3-emscripten)
IDSL.IPA.pdf |IDSL.IPA.html✨
IDSL.IPA/json (API)

Peer review:

Bug tracker:https://github.com/idslme/idsl.ipa/issues

On CRAN:

exposomefeature-detectionlipidomicsmass-spectrometrymetabolomicspeak-detectionpeak-pickingsmall-moleculeuntargeted-metabolomics

53 exports 14 stars 2.33 score 23 dependencies 4 dependents 1 scripts 500 downloads

Last updated 1 years agofrom:daf678ff21. Checks:OK: 7. Indexed: yes.

Exports:alignedPeakPropertyTableCorrelationListCalculatoranalyteRetentionTimeCorrectorchromatographicPeakAnalysischromatographicPeakDetectorderivative5pointsStencilgapFillingCoreIPA_aggregateIPA_baselineDeveloperIPA_CompoundsAnnotationIPA_GapFillerIPA_IonPairingIPA_logRecorderIPA_messageIPA_MSdeconvoluterIPA_peak_alignment_folder_xlsxAnalyzerIPA_PeakAlignmentIPA_PeakAnalyzerIPA_PeaklistAnnotationIPA_spectraListAggregatorIPA_targetedIPA_targeted_xlsxAnalyzerIPA_workflowIPA_WorkflowIPA_xlsxAnalyzerislocalminimumislocaloptimumloadRdatamzClusteringRawXICmzRTindexerpeakAlignmentCorepeakAreaCalculatorpeakAsymmetryFactorCalculatorpeakDerivativeSkewnessCalculatorpeakFrontingTailingResolverpeakGaussianityCalculatorpeakPropertyTableFreqCalculatorpeakPropertyTableMedianCalculatorpeakPseudomomentsSymmetryCalculatorpeakSharpnessCalculatorpeakUSPtailingFactorCalculatorpeakWidthCalculatorpeakXcolFillerpeakXcolFlaggerplot_mz_eicplot_simple_ticprimaryXICdeconvoluterrecursiveMZpeaklistCorrectorreferenceRetentionTimeDetectorSNRbaselineSNRrmsSNRxcmstargetedIonPairingXIC

Dependencies:base64enccellrangerclicpp11crayonfansigluehmsIDSL.MXPlifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readxlrematchrlangtibbleutf8vctrsxml2